J5_6ND5_014

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAGC*GCAAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND5|1|2A|C|601
6ND5|1|2A|G|602
6ND5|1|2A|A|603
6ND5|1|2A|G|604
*
6ND5|1|2A|C|624
6ND5|1|2A|G|625
6ND5|1|2A|U|626
6ND5|1|2A|A|627
6ND5|1|2A|G|628
*
6ND5|1|2A|C|635
6ND5|1|2A|G|636
6ND5|1|2A|A|637
6ND5|1|2A|G|638
*
6ND5|1|2A|C|650
6ND5|1|2A|G|651
6ND5|1|2A|C|652
6ND5|1|2A|A|652|||A
6ND5|1|2A|A|652|||B
6ND5|1|2A|G|652|||C
6ND5|1|2A|C|652|||D
*
6ND5|1|2A|G|652|||U
6ND5|1|2A|C|652|||V
6ND5|1|2A|A|653
6ND5|1|2A|A|654
6ND5|1|2A|A|655
6ND5|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15