J5_6ND6_002
3D structure
- PDB id
- 6ND6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 6ND6|1|1A|U|272|||A, 6ND6|1|1A|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ND6|1|1A|C|268
6ND6|1|1A|U|269
6ND6|1|1A|A|270
6ND6|1|1A|A|271
6ND6|1|1A|A|271|||A
6ND6|1|1A|C|271|||B
*
6ND6|1|1A|G|271|||V
6ND6|1|1A|G|271|||W
6ND6|1|1A|G|271|||X
6ND6|1|1A|U|271|||Y
6ND6|1|1A|C|271|||Z
6ND6|1|1A|G|272
6ND6|1|1A|U|272|||A
6ND6|1|1A|G|272|||B
*
6ND6|1|1A|C|366
6ND6|1|1A|G|370
6ND6|1|1A|A|371
6ND6|1|1A|G|372
6ND6|1|1A|U|373
6ND6|1|1A|A|374
6ND6|1|1A|C|375
*
6ND6|1|1A|G|399
6ND6|1|1A|G|400
6ND6|1|1A|A|401
6ND6|1|1A|A|402
6ND6|1|1A|U|403
6ND6|1|1A|C|404
6ND6|1|1A|U|405
6ND6|1|1A|G|406
*
6ND6|1|1A|U|421
6ND6|1|1A|A|422
6ND6|1|1A|A|423
6ND6|1|1A|G|424
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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