J5_6NSH_009

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

6NSH|1|RA|A|2062, 6NSH|1|RA|A|2448, 6NSH|1|RA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NSH|1|RA|A|2057
6NSH|1|RA|A|2058
6NSH|1|RA|A|2059
6NSH|1|RA|A|2060
6NSH|1|RA|G|2061
6NSH|1|RA|A|2062
6NSH|1|RA|C|2063
6NSH|1|RA|C|2064
*
6NSH|1|RA|G|2446
6NSH|1|RA|G|2447
6NSH|1|RA|A|2448
6NSH|1|RA|U|2449
6NSH|1|RA|A|2450
6NSH|1|RA|A|2451
6NSH|1|RA|C|2452
6NSH|1|RA|A|2453
*
6NSH|1|RA|U|2500
6NSH|1|RA|C|2501
6NSH|1|RA|G|2502
6NSH|1|RA|A|2503
6NSH|1|RA|U|2504
6NSH|1|RA|G|2505
6NSH|1|RA|U|2506
6NSH|1|RA|C|2507
*
6NSH|1|RA|G|2582
6NSH|1|RA|G|2583
6NSH|1|RA|U|2584
6NSH|1|RA|U|2585
6NSH|1|RA|C|2586
6NSH|1|RA|A|2587
6NSH|1|RA|G|2588
*
6NSH|1|RA|C|2606
6NSH|1|RA|G|2607
6NSH|1|RA|G|2608
6NSH|1|RA|U|2609
6NSH|1|RA|C|2610
6NSH|1|RA|U|2611

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RD

50S ribosomal protein L2

Chain RE

50S ribosomal protein L3

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15

Chain RW

50S ribosomal protein L22