J5_6NTA_008

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

6NTA|1|RA|A|2062, 6NTA|1|RA|A|2448, 6NTA|1|RA|U|2449, 6NTA|1|RA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NTA|1|RA|A|2057
6NTA|1|RA|A|2058
6NTA|1|RA|A|2059
6NTA|1|RA|A|2060
6NTA|1|RA|G|2061
6NTA|1|RA|A|2062
6NTA|1|RA|C|2063
6NTA|1|RA|C|2064
*
6NTA|1|RA|G|2446
6NTA|1|RA|G|2447
6NTA|1|RA|A|2448
6NTA|1|RA|U|2449
6NTA|1|RA|A|2450
6NTA|1|RA|A|2451
6NTA|1|RA|C|2452
6NTA|1|RA|A|2453
*
6NTA|1|RA|U|2500
6NTA|1|RA|C|2501
6NTA|1|RA|G|2502
6NTA|1|RA|A|2503
6NTA|1|RA|U|2504
6NTA|1|RA|G|2505
6NTA|1|RA|U|2506
6NTA|1|RA|C|2507
*
6NTA|1|RA|G|2582
6NTA|1|RA|G|2583
6NTA|1|RA|U|2584
6NTA|1|RA|U|2585
6NTA|1|RA|C|2586
6NTA|1|RA|A|2587
6NTA|1|RA|G|2588
*
6NTA|1|RA|C|2606
6NTA|1|RA|G|2607
6NTA|1|RA|G|2608
6NTA|1|RA|U|2609
6NTA|1|RA|C|2610
6NTA|1|RA|U|2611

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RD

50S ribosomal protein L2

Chain RE

50S ribosomal protein L3

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15

Chain RW

50S ribosomal protein L22