J5_6O3M_004

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

6O3M|1|RA|U|271|||C, 6O3M|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6O3M|1|RA|C|268
6O3M|1|RA|U|269
6O3M|1|RA|A|270
6O3M|1|RA|A|270|||A
6O3M|1|RA|A|270|||B
6O3M|1|RA|C|270|||C
*
6O3M|1|RA|G|270|||W
6O3M|1|RA|G|270|||X
6O3M|1|RA|G|270|||Y
6O3M|1|RA|U|270|||Z
6O3M|1|RA|C|271|||A
6O3M|1|RA|G|271|||B
6O3M|1|RA|U|271|||C
6O3M|1|RA|G|271|||D
*
6O3M|1|RA|C|366
6O3M|1|RA|G|370
6O3M|1|RA|A|371
6O3M|1|RA|G|372
6O3M|1|RA|U|373
6O3M|1|RA|A|374
6O3M|1|RA|C|375
*
6O3M|1|RA|G|399
6O3M|1|RA|G|400
6O3M|1|RA|A|401
6O3M|1|RA|A|402
6O3M|1|RA|U|403
6O3M|1|RA|C|404
6O3M|1|RA|U|405
6O3M|1|RA|G|406
*
6O3M|1|RA|U|421
6O3M|1|RA|A|422
6O3M|1|RA|A|423
6O3M|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9