J5_6O8W_008

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GACGAACGCUGG*CGUG*CUGUUG*CCAGAAAGCC*GCAAGCGUUGUC

Length

44 nucleotides

Bulged bases

6O8W|1|a|A|26, 6O8W|1|a|G|28, 6O8W|1|a|A|29, 6O8W|1|a|G|35

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6O8W|1|a|G|25
6O8W|1|a|A|26
6O8W|1|a|C|27
6O8W|1|a|G|28
6O8W|1|a|A|29
6O8W|1|a|A|30
6O8W|1|a|C|31
6O8W|1|a|G|32
6O8W|1|a|C|33
6O8W|1|a|U|34
6O8W|1|a|G|35
6O8W|1|a|G|36
*
6O8W|1|a|C|418
6O8W|1|a|G|419
6O8W|1|a|U|420
6O8W|1|a|G|421
*
6O8W|1|a|C|451
6O8W|1|a|U|452
6O8W|1|a|G|453
6O8W|1|a|U|454
6O8W|1|a|U|455
6O8W|1|a|G|456
*
6O8W|1|a|C|508
6O8W|1|a|C|509
6O8W|1|a|A|510
6O8W|1|a|G|511
6O8W|1|a|A|512
6O8W|1|a|A|513
6O8W|1|a|A|514
6O8W|1|a|G|515
6O8W|1|a|C|516
6O8W|1|a|C|517
*
6O8W|1|a|G|559
6O8W|1|a|C|560
6O8W|1|a|A|561
6O8W|1|a|A|562
6O8W|1|a|G|563
6O8W|1|a|C|564
6O8W|1|a|G|565
6O8W|1|a|U|566
6O8W|1|a|U|567
6O8W|1|a|G|568
6O8W|1|a|U|569
6O8W|1|a|C|570

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12