J5_6O8Z_006

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCC

Length

35 nucleotides

Bulged bases

6O8Z|1|A|A|2462, 6O8Z|1|A|U|2463, 6O8Z|1|A|C|2600, 6O8Z|1|A|A|2601, 6O8Z|1|A|U|2623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6O8Z|1|A|G|2071
6O8Z|1|A|A|2072
6O8Z|1|A|A|2073
6O8Z|1|A|A|2074
6O8Z|1|A|G|2075
6O8Z|1|A|A|2076
6O8Z|1|A|C|2077
6O8Z|1|A|C|2078
*
6O8Z|1|A|G|2460
6O8Z|1|A|G|2461
6O8Z|1|A|A|2462
6O8Z|1|A|U|2463
6O8Z|1|A|A|2464
6O8Z|1|A|A|2465
6O8Z|1|A|C|2466
6O8Z|1|A|A|2467
*
6O8Z|1|A|U|2514
6O8Z|1|A|C|2515
6O8Z|1|A|G|2516
6O8Z|1|A|A|2517
6O8Z|1|A|U|2518
6O8Z|1|A|G|2519
6O8Z|1|A|U|2520
*
6O8Z|1|A|G|2597
6O8Z|1|A|U|2598
6O8Z|1|A|U|2599
6O8Z|1|A|C|2600
6O8Z|1|A|A|2601
6O8Z|1|A|G|2602
*
6O8Z|1|A|C|2620
6O8Z|1|A|G|2621
6O8Z|1|A|G|2622
6O8Z|1|A|U|2623
6O8Z|1|A|C|2624
6O8Z|1|A|C|2625

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain N

50S ribosomal protein L16

Chain T

50S ribosomal protein L22