J5_6O8Z_008

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUGG*CGUG*CUGUUGUU*AACCAGAAAG*CAAG

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6O8Z|1|a|C|33
6O8Z|1|a|U|34
6O8Z|1|a|G|35
6O8Z|1|a|G|36
*
6O8Z|1|a|C|418
6O8Z|1|a|G|419
6O8Z|1|a|U|420
6O8Z|1|a|G|421
*
6O8Z|1|a|C|451
6O8Z|1|a|U|452
6O8Z|1|a|G|453
6O8Z|1|a|U|454
6O8Z|1|a|U|455
6O8Z|1|a|G|456
6O8Z|1|a|U|457
6O8Z|1|a|U|458
*
6O8Z|1|a|A|506
6O8Z|1|a|A|507
6O8Z|1|a|C|508
6O8Z|1|a|C|509
6O8Z|1|a|A|510
6O8Z|1|a|G|511
6O8Z|1|a|A|512
6O8Z|1|a|A|513
6O8Z|1|a|A|514
6O8Z|1|a|G|515
*
6O8Z|1|a|C|560
6O8Z|1|a|A|561
6O8Z|1|a|A|562
6O8Z|1|a|G|563

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12