J5_6O9K_007

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6O9K_007 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1003

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6O9K|1|a|C|36
6O9K|1|a|U|37
6O9K|1|a|G|38
6O9K|1|a|G|39
*
6O9K|1|a|C|403
6O9K|1|a|G|404
6O9K|1|a|U|405
6O9K|1|a|G|406
*
6O9K|1|a|C|436
6O9K|1|a|U|437
6O9K|1|a|U|438
6O9K|1|a|U|439
6O9K|1|a|C|440
*
6O9K|1|a|G|497
6O9K|1|a|A|498
6O9K|1|a|A|499
6O9K|1|a|G|500
*
6O9K|1|a|C|545
6O9K|1|a|A|546
6O9K|1|a|A|547
6O9K|1|a|G|548

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12

Chain z

Translation initiation factor IF-2