J5_6O9K_010

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6O9K|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6O9K_010 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1257

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6O9K|1|A|C|47
6O9K|1|A|G|48
6O9K|1|A|A|49
6O9K|1|A|U|50
6O9K|1|A|G|51
6O9K|1|A|A|52
6O9K|1|A|A|53
6O9K|1|A|G|54
*
6O9K|1|A|C|116
6O9K|1|A|G|117
6O9K|1|A|A|118
6O9K|1|A|A|119
6O9K|1|A|U|120
6O9K|1|A|G|121
*
6O9K|1|A|C|130
6O9K|1|A|A|131
*
6O9K|1|A|U|148
6O9K|1|A|A|149
6O9K|1|A|U|150
*
6O9K|1|A|A|176
6O9K|1|A|G|177
6O9K|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34