3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
Length
37 nucleotides
Bulged bases
6OF6|1|YA|A|2062, 6OF6|1|YA|A|2448, 6OF6|1|YA|U|2449, 6OF6|1|YA|U|2609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OF6|1|YA|A|2057
6OF6|1|YA|A|2058
6OF6|1|YA|A|2059
6OF6|1|YA|A|2060
6OF6|1|YA|G|2061
6OF6|1|YA|A|2062
6OF6|1|YA|C|2063
6OF6|1|YA|C|2064
*
6OF6|1|YA|G|2446
6OF6|1|YA|G|2447
6OF6|1|YA|A|2448
6OF6|1|YA|U|2449
6OF6|1|YA|A|2450
6OF6|1|YA|A|2451
6OF6|1|YA|C|2452
6OF6|1|YA|A|2453
*
6OF6|1|YA|U|2500
6OF6|1|YA|C|2501
6OF6|1|YA|G|2502
6OF6|1|YA|A|2503
6OF6|1|YA|U|2504
6OF6|1|YA|G|2505
6OF6|1|YA|U|2506
6OF6|1|YA|C|2507
*
6OF6|1|YA|G|2582
6OF6|1|YA|G|2583
6OF6|1|YA|U|2584
6OF6|1|YA|U|2585
6OF6|1|YA|C|2586
6OF6|1|YA|A|2587
6OF6|1|YA|G|2588
*
6OF6|1|YA|C|2606
6OF6|1|YA|G|2607
6OF6|1|YA|G|2608
6OF6|1|YA|U|2609
6OF6|1|YA|C|2610
6OF6|1|YA|U|2611

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XV
Transfer RNA; tRNA
Chain XY
Transfer RNA; tRNA
Chain Y0
50S ribosomal protein L27
Chain Y5
50S ribosomal protein L32
Chain YD
50S ribosomal protein L2
Chain YE
50S ribosomal protein L3
Chain YF
50S ribosomal protein L4
Chain YW
50S ribosomal protein L22

Coloring options:

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