J5_6OGF_001

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6OGF|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OGF_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1197

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6OGF|1|1|C|47
6OGF|1|1|G|48
6OGF|1|1|A|49
6OGF|1|1|U|50
6OGF|1|1|G|51
6OGF|1|1|A|52
6OGF|1|1|A|53
6OGF|1|1|G|54
*
6OGF|1|1|C|116
6OGF|1|1|G|117
6OGF|1|1|A|118
6OGF|1|1|A|119
6OGF|1|1|U|120
6OGF|1|1|G|121
*
6OGF|1|1|C|130
6OGF|1|1|A|131
*
6OGF|1|1|U|148
6OGF|1|1|A|149
6OGF|1|1|U|150
*
6OGF|1|1|A|176
6OGF|1|1|G|177
6OGF|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34