3D structure

PDB id
6OGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
6OGF|1|1|A|2062, 6OGF|1|1|A|2448, 6OGF|1|1|U|2449, 6OGF|1|1|G|2505, 6OGF|1|1|U|2506, 6OGF|1|1|U|2609, 6OGF|1|1|C|2610
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OGF|1|1|G|2057
6OGF|1|1|A|2058
6OGF|1|1|A|2059
6OGF|1|1|A|2060
6OGF|1|1|G|2061
6OGF|1|1|A|2062
6OGF|1|1|C|2063
6OGF|1|1|C|2064
*
6OGF|1|1|G|2446
6OGF|1|1|G|2447
6OGF|1|1|A|2448
6OGF|1|1|U|2449
6OGF|1|1|A|2450
6OGF|1|1|A|2451
6OGF|1|1|C|2452
6OGF|1|1|A|2453
*
6OGF|1|1|U|2500
6OGF|1|1|C|2501
6OGF|1|1|G|2502
6OGF|1|1|A|2503
6OGF|1|1|U|2504
6OGF|1|1|G|2505
6OGF|1|1|U|2506
6OGF|1|1|C|2507
*
6OGF|1|1|G|2582
6OGF|1|1|G|2583
6OGF|1|1|U|2584
6OGF|1|1|U|2585
6OGF|1|1|U|2586
6OGF|1|1|A|2587
6OGF|1|1|G|2588
*
6OGF|1|1|C|2606
6OGF|1|1|G|2607
6OGF|1|1|G|2608
6OGF|1|1|U|2609
6OGF|1|1|C|2610
6OGF|1|1|C|2611

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 8
Peptide chain release factor 2
Chain B
50S ribosomal protein L32
Chain b
50S ribosomal protein L2
Chain c
50S ribosomal protein L3
Chain d
50S ribosomal protein L4
Chain l
50S ribosomal protein L15
Chain m
50S ribosomal protein L16
Chain s
50S ribosomal protein L22

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