3D structure

PDB id
6OGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6OGF_008 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.1802
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6OGF|1|3|C|36
6OGF|1|3|U|37
6OGF|1|3|G|38
6OGF|1|3|G|39
*
6OGF|1|3|C|403
6OGF|1|3|G|404
6OGF|1|3|U|405
6OGF|1|3|G|406
*
6OGF|1|3|C|436
6OGF|1|3|U|437
6OGF|1|3|U|438
6OGF|1|3|U|439
6OGF|1|3|C|440
6OGF|1|3|A|441
6OGF|1|3|G|442
*
6OGF|1|3|C|492
6OGF|1|3|A|493
6OGF|1|3|G|494
6OGF|1|3|A|495
6OGF|1|3|A|496
6OGF|1|3|G|497
6OGF|1|3|A|498
6OGF|1|3|A|499
6OGF|1|3|G|500
*
6OGF|1|3|C|545
6OGF|1|3|A|546
6OGF|1|3|A|547
6OGF|1|3|G|548

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain I
30S ribosomal protein S4
Chain Q
30S ribosomal protein S12

Coloring options:


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