3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CG*CAC*GGG
Length
22 nucleotides
Bulged bases
6OJ2|1|RA|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6OJ2_003 not in the Motif Atlas
Homologous match to J5_5J7L_013
Geometric discrepancy: 0.0984
The information below is about J5_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6OJ2|1|RA|C|47
6OJ2|1|RA|G|48
6OJ2|1|RA|A|49
6OJ2|1|RA|U|50
6OJ2|1|RA|G|51
6OJ2|1|RA|A|52
6OJ2|1|RA|A|53
6OJ2|1|RA|G|54
*
6OJ2|1|RA|C|116
6OJ2|1|RA|G|117
6OJ2|1|RA|A|118
6OJ2|1|RA|A|119
6OJ2|1|RA|U|120
6OJ2|1|RA|G|121
*
6OJ2|1|RA|C|130
6OJ2|1|RA|G|131
*
6OJ2|1|RA|C|148
6OJ2|1|RA|A|149
6OJ2|1|RA|C|150
*
6OJ2|1|RA|G|176
6OJ2|1|RA|G|177
6OJ2|1|RA|G|178

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34
Chain RX
50S ribosomal protein L23

Coloring options:


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