J5_6OJ2_003

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6OJ2|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OJ2_003 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0984

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6OJ2|1|RA|C|47
6OJ2|1|RA|G|48
6OJ2|1|RA|A|49
6OJ2|1|RA|U|50
6OJ2|1|RA|G|51
6OJ2|1|RA|A|52
6OJ2|1|RA|A|53
6OJ2|1|RA|G|54
*
6OJ2|1|RA|C|116
6OJ2|1|RA|G|117
6OJ2|1|RA|A|118
6OJ2|1|RA|A|119
6OJ2|1|RA|U|120
6OJ2|1|RA|G|121
*
6OJ2|1|RA|C|130
6OJ2|1|RA|G|131
*
6OJ2|1|RA|C|148
6OJ2|1|RA|A|149
6OJ2|1|RA|C|150
*
6OJ2|1|RA|G|176
6OJ2|1|RA|G|177
6OJ2|1|RA|G|178

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23