J5_6OJ2_004

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

6OJ2|1|RA|U|271|||C, 6OJ2|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OJ2|1|RA|C|268
6OJ2|1|RA|U|269
6OJ2|1|RA|A|270
6OJ2|1|RA|A|270|||A
6OJ2|1|RA|A|270|||B
6OJ2|1|RA|C|270|||C
*
6OJ2|1|RA|G|270|||W
6OJ2|1|RA|G|270|||X
6OJ2|1|RA|G|270|||Y
6OJ2|1|RA|U|270|||Z
6OJ2|1|RA|C|271|||A
6OJ2|1|RA|G|271|||B
6OJ2|1|RA|U|271|||C
6OJ2|1|RA|G|271
*
6OJ2|1|RA|C|366
6OJ2|1|RA|G|370
6OJ2|1|RA|A|371
6OJ2|1|RA|G|372
6OJ2|1|RA|U|373
6OJ2|1|RA|A|374
6OJ2|1|RA|C|375
*
6OJ2|1|RA|G|399
6OJ2|1|RA|G|400
6OJ2|1|RA|A|401
6OJ2|1|RA|A|402
6OJ2|1|RA|U|403
6OJ2|1|RA|C|404
6OJ2|1|RA|U|405
6OJ2|1|RA|G|406
*
6OJ2|1|RA|U|421
6OJ2|1|RA|A|422
6OJ2|1|RA|A|423
6OJ2|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9