3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGACUC*GGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
6OJ2|1|RA|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6OJ2_006 not in the Motif Atlas
Homologous match to J5_7A0S_004
Geometric discrepancy: 0.0884
The information below is about J5_7A0S_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

6OJ2|1|RA|C|584
6OJ2|1|RA|G|585
6OJ2|1|RA|A|586
6OJ2|1|RA|C|587
6OJ2|1|RA|U|588
6OJ2|1|RA|C|589
*
6OJ2|1|RA|G|668
6OJ2|1|RA|G|669
6OJ2|1|RA|A|670
6OJ2|1|RA|C|671
*
6OJ2|1|RA|G|809
6OJ2|1|RA|U|810
6OJ2|1|RA|U|811
6OJ2|1|RA|C|812
*
6OJ2|1|RA|G|1195
6OJ2|1|RA|C|1196
*
6OJ2|1|RA|G|1250
6OJ2|1|RA|C|1251
6OJ2|1|RA|G|1252
6OJ2|1|RA|A|1253
6OJ2|1|RA|A|1254
6OJ2|1|RA|U|1255
6OJ2|1|RA|G|1256

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R8
50S ribosomal protein L35
Chain RF
50S ribosomal protein L4
Chain RP
50S ribosomal protein L15
Chain RU
50S ribosomal protein L20
Chain RV
50S ribosomal protein L21

Coloring options:


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