J5_6OKK_005
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUUCA*UUAA*UG*CAAAAUUGAA*UUACGAU
- Length
- 29 nucleotides
- Bulged bases
- 6OKK|1|A|U|646, 6OKK|1|A|U|876, 6OKK|1|A|A|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OKK|1|A|A|643
6OKK|1|A|U|644
6OKK|1|A|U|645
6OKK|1|A|U|646
6OKK|1|A|C|647
6OKK|1|A|A|648
*
6OKK|1|A|U|752
6OKK|1|A|U|753
6OKK|1|A|A|754
6OKK|1|A|A|755
*
6OKK|1|A|U|792
6OKK|1|A|G|793
*
6OKK|1|A|C|871
6OKK|1|A|A|872
6OKK|1|A|A|873
6OKK|1|A|A|874
6OKK|1|A|A|875
6OKK|1|A|U|876
6OKK|1|A|U|877
6OKK|1|A|G|878
6OKK|1|A|A|879
6OKK|1|A|A|880
*
6OKK|1|A|U|922
6OKK|1|A|U|923
6OKK|1|A|A|924
6OKK|1|A|C|925
6OKK|1|A|G|926
6OKK|1|A|A|927
6OKK|1|A|U|928
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein S7
- Chain K
- 40S ribosomal protein S15A
- Chain Q
- 40S ribosomal protein S23
- Chain U
- 40S ribosomal protein S15
- Chain V
- 40S ribosomal protein S11
Coloring options: