J5_6OLG_002

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAGCGCC*GCGUACGG*CCGGAGUCG*CAAAGCG*UAAG

Length

36 nucleotides

Bulged bases

6OLG|1|A2|G|157, 6OLG|1|A2|C|303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLG|1|A2|C|111
6OLG|1|A2|C|112
6OLG|1|A2|A|113
6OLG|1|A2|G|114
6OLG|1|A2|C|115
6OLG|1|A2|G|116
6OLG|1|A2|C|117
6OLG|1|A2|C|118
*
6OLG|1|A2|G|151
6OLG|1|A2|C|152
6OLG|1|A2|G|153
6OLG|1|A2|U|154
6OLG|1|A2|A|155
6OLG|1|A2|C|156
6OLG|1|A2|G|157
6OLG|1|A2|G|158
*
6OLG|1|A2|C|269
6OLG|1|A2|C|270
6OLG|1|A2|G|271
6OLG|1|A2|G|272
6OLG|1|A2|A|273
6OLG|1|A2|G|274
6OLG|1|A2|U|275
6OLG|1|A2|C|276
6OLG|1|A2|G|277
*
6OLG|1|A2|C|298
6OLG|1|A2|A|299
6OLG|1|A2|A|300
6OLG|1|A2|A|301
6OLG|1|A2|G|302
6OLG|1|A2|C|303
6OLG|1|A2|G|304
*
6OLG|1|A2|U|321
6OLG|1|A2|A|322
6OLG|1|A2|A|323
6OLG|1|A2|G|324

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L7a

Chain AL

60S ribosomal protein L13

Chain AN

60S ribosomal protein L15

Chain Ah

60S ribosomal protein L35

Chain Ai

60S ribosomal protein L36