J5_6OLG_004

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAGUCGGCAAGCCGG*UG*UG*CGGACCAGG*CACUGUC

Length

37 nucleotides

Bulged bases

6OLG|1|A2|G|3591, 6OLG|1|A2|G|3596, 6OLG|1|A2|G|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLG|1|A2|G|2826
6OLG|1|A2|G|2827
6OLG|1|A2|A|2828
6OLG|1|A2|A|2829
6OLG|1|A2|G|2830
6OLG|1|A2|U|2831
6OLG|1|A2|C|2832
6OLG|1|A2|G|2833
6OLG|1|A2|G|2834
6OLG|1|A2|C|2835
6OLG|1|A2|A|2836
6OLG|1|A2|A|2837
6OLG|1|A2|G|2838
6OLG|1|A2|C|2839
6OLG|1|A2|C|2840
6OLG|1|A2|G|2841
6OLG|1|A2|G|2842
*
6OLG|1|A2|U|2866
6OLG|1|A2|G|2867
*
6OLG|1|A2|U|3584
6OLG|1|A2|G|3585
*
6OLG|1|A2|C|3589
6OLG|1|A2|G|3590
6OLG|1|A2|G|3591
6OLG|1|A2|A|3592
6OLG|1|A2|C|3593
6OLG|1|A2|C|3594
6OLG|1|A2|A|3595
6OLG|1|A2|G|3596
6OLG|1|A2|G|3597
*
6OLG|1|A2|C|3806
6OLG|1|A2|A|3807
6OLG|1|A2|C|3808
6OLG|1|A2|U|3809
6OLG|1|A2|G|3810
6OLG|1|A2|U|3811
6OLG|1|A2|C|3812

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AR

60S ribosomal protein L19

Chain AV

60S ribosomal protein L23

Chain AW

60S ribosomal protein L24

Chain B1

Small subunit ribosomal RNA; SSU rRNA