J5_6OLG_008

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

6OLG|1|B1|A|560, 6OLG|1|B1|A|590, 6OLG|1|B1|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLG|1|B1|C|30
6OLG|1|B1|U|31
6OLG|1|B1|U|32
6OLG|1|B1|G|33
6OLG|1|B1|U|34
*
6OLG|1|B1|A|521
6OLG|1|B1|A|522
6OLG|1|B1|A|523
6OLG|1|B1|U|524
6OLG|1|B1|A|525
6OLG|1|B1|A|526
6OLG|1|B1|C|527
*
6OLG|1|B1|G|558
6OLG|1|B1|G|559
6OLG|1|B1|A|560
6OLG|1|B1|A|561
6OLG|1|B1|U|562
6OLG|1|B1|G|563
6OLG|1|B1|A|564
6OLG|1|B1|G|565
*
6OLG|1|B1|C|585
6OLG|1|B1|G|586
6OLG|1|B1|A|587
6OLG|1|B1|G|588
6OLG|1|B1|G|589
6OLG|1|B1|A|590
6OLG|1|B1|U|591
6OLG|1|B1|C|592
6OLG|1|B1|C|593
6OLG|1|B1|A|594
6OLG|1|B1|U|595
*
6OLG|1|B1|A|641
6OLG|1|B1|U|642
6OLG|1|B1|A|643
6OLG|1|B1|G|644

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BJ

40S ribosomal protein S9

Chain BX

40S ribosomal protein S23

Chain Be

40S ribosomal protein S30