J5_6OLG_012
3D structure
- PDB id
- 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUCUUGG*CCCUUGC*GCGUUUAC*GAAUAAUGGAAUAGGACCGC*GAGGCCAUGAU
- Length
- 53 nucleotides
- Bulged bases
- 6OLG|1|B1|C|741, 6OLG|1|B1|U|743, 6OLG|1|B1|G|798, 6OLG|1|B1|U|871, 6OLG|1|B1|G|873, 6OLG|1|B1|A|913, 6OLG|1|B1|U|914
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OLG|1|B1|A|685
6OLG|1|B1|U|686
6OLG|1|B1|C|687
6OLG|1|B1|U|688
6OLG|1|B1|U|689
6OLG|1|B1|G|690
6OLG|1|B1|G|691
*
6OLG|1|B1|C|739
6OLG|1|B1|C|740
6OLG|1|B1|C|741
6OLG|1|B1|U|742
6OLG|1|B1|U|743
6OLG|1|B1|G|744
6OLG|1|B1|C|745
*
6OLG|1|B1|G|796
6OLG|1|B1|C|797
6OLG|1|B1|G|798
6OLG|1|B1|U|799
6OLG|1|B1|U|800
6OLG|1|B1|U|801
6OLG|1|B1|A|802
6OLG|1|B1|C|803
*
6OLG|1|B1|G|860
6OLG|1|B1|A|861
6OLG|1|B1|A|862
6OLG|1|B1|U|863
6OLG|1|B1|A|864
6OLG|1|B1|A|865
6OLG|1|B1|U|866
6OLG|1|B1|G|867
6OLG|1|B1|G|868
6OLG|1|B1|A|869
6OLG|1|B1|A|870
6OLG|1|B1|U|871
6OLG|1|B1|A|872
6OLG|1|B1|G|873
6OLG|1|B1|G|874
6OLG|1|B1|A|875
6OLG|1|B1|C|876
6OLG|1|B1|C|877
6OLG|1|B1|G|878
6OLG|1|B1|C|879
*
6OLG|1|B1|G|907
6OLG|1|B1|A|908
6OLG|1|B1|G|909
6OLG|1|B1|G|910
6OLG|1|B1|C|911
6OLG|1|B1|C|912
6OLG|1|B1|A|913
6OLG|1|B1|U|914
6OLG|1|B1|G|915
6OLG|1|B1|A|916
6OLG|1|B1|U|917
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19
- Chain BE
- 40S ribosomal protein S4, Y isoform 1
- Chain BH
- 40S ribosomal protein S7
- Chain BL
- 40S ribosomal protein S11
- Chain BN
- 40S ribosomal protein S13
- Chain BW
- 40S ribosomal protein S15a
- Chain BX
- 40S ribosomal protein S23
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