Loop J5_6OLG

3D structure

PDB id: 6OLG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: GUCGACUU*AUGCCGACGGGC*GUGCAUU*ACCUCGGGCCGAU*ACGACC
Length: 46 nucleotides
Bulged bases: 6OLG|1|B1|C|142, 6OLG|1|B1|U|305, 6OLG|1|B1|G|307
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6OLG|1|B1|G|123
6OLG|1|B1|U|124
6OLG|1|B1|C|125
6OLG|1|B1|G|126
6OLG|1|B1|A|141
6OLG|1|B1|C|142
6OLG|1|B1|U|143
6OLG|1|B1|U|144
*
6OLG|1|B1|A|175
6OLG|1|B1|U|176
6OLG|1|B1|G|177
6OLG|1|B1|C|178
6OLG|1|B1|C|179
6OLG|1|B1|G|180
6OLG|1|B1|A|181
6OLG|1|B1|C|182
6OLG|1|B1|G|183
6OLG|1|B1|G|184
6OLG|1|B1|G|185
6OLG|1|B1|C|186
*
6OLG|1|B1|G|213
6OLG|1|B1|U|214
6OLG|1|B1|G|215
6OLG|1|B1|C|216
6OLG|1|B1|A|217
6OLG|1|B1|U|218
6OLG|1|B1|U|219
*
6OLG|1|B1|A|302
6OLG|1|B1|C|303
6OLG|1|B1|C|304
6OLG|1|B1|U|305
6OLG|1|B1|C|306
6OLG|1|B1|G|307
6OLG|1|B1|G|308
6OLG|1|B1|G|309
6OLG|1|B1|C|310
6OLG|1|B1|C|311
6OLG|1|B1|G|312
6OLG|1|B1|A|313
6OLG|1|B1|U|314
*
6OLG|1|B1|A|336
6OLG|1|B1|C|337
6OLG|1|B1|G|338
6OLG|1|B1|A|339
6OLG|1|B1|C|340
6OLG|1|B1|C|341

Current chains

Chain B1: 18S ribosomal RNA

Nearby chains

Chain BE: 40S ribosomal protein S4, Y isoform 1
Chain BG: 40S ribosomal protein S6
Chain BI: 40S ribosomal protein S8

J5_6OLG_015