J5_6OLI_001
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUGAAG*CGAACG*CG*UAC*GUG
- Length
- 22 nucleotides
- Bulged bases
- 6OLI|1|D|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6OLI_001 not in the Motif Atlas
- Homologous match to J5_9H3G_001
- Geometric discrepancy: 0.1406
- The information below is about J5_9H3G_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.4
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6OLI|1|D|C|35
6OLI|1|D|G|36
6OLI|1|D|A|37
6OLI|1|D|U|38
6OLI|1|D|G|39
6OLI|1|D|A|40
6OLI|1|D|A|41
6OLI|1|D|G|42
*
6OLI|1|D|C|101
6OLI|1|D|G|102
6OLI|1|D|A|103
6OLI|1|D|A|104
6OLI|1|D|C|105
6OLI|1|D|G|106
*
6OLI|1|D|C|113
6OLI|1|D|G|114
*
6OLI|1|D|U|136
6OLI|1|D|A|137
6OLI|1|D|C|138
*
6OLI|1|t|G|19
6OLI|1|t|U|20
6OLI|1|t|G|21
Current chains
- Chain D
- 5.8S ribosomal RNA
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain O
- 60S ribosomal protein L15
- Chain Y
- 60S ribosomal protein L23a
- Chain i
- 60S ribosomal protein L35
- Chain k
- 60S ribosomal protein L37
- Chain m
- 60S ribosomal protein L39
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