J5_6OLZ_002

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAGCGCC*GCGUACGG*CCGGAGUCGG*CCAAAGCGG*CUAAG

Length

40 nucleotides

Bulged bases

6OLZ|1|A2|G|157, 6OLZ|1|A2|C|303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OLZ|1|A2|C|111
6OLZ|1|A2|C|112
6OLZ|1|A2|A|113
6OLZ|1|A2|G|114
6OLZ|1|A2|C|115
6OLZ|1|A2|G|116
6OLZ|1|A2|C|117
6OLZ|1|A2|C|118
*
6OLZ|1|A2|G|151
6OLZ|1|A2|C|152
6OLZ|1|A2|G|153
6OLZ|1|A2|U|154
6OLZ|1|A2|A|155
6OLZ|1|A2|C|156
6OLZ|1|A2|G|157
6OLZ|1|A2|G|158
*
6OLZ|1|A2|C|269
6OLZ|1|A2|C|270
6OLZ|1|A2|G|271
6OLZ|1|A2|G|272
6OLZ|1|A2|A|273
6OLZ|1|A2|G|274
6OLZ|1|A2|U|275
6OLZ|1|A2|C|276
6OLZ|1|A2|G|277
6OLZ|1|A2|G|278
*
6OLZ|1|A2|C|297
6OLZ|1|A2|C|298
6OLZ|1|A2|A|299
6OLZ|1|A2|A|300
6OLZ|1|A2|A|301
6OLZ|1|A2|G|302
6OLZ|1|A2|C|303
6OLZ|1|A2|G|304
6OLZ|1|A2|G|305
*
6OLZ|1|A2|C|320
6OLZ|1|A2|U|321
6OLZ|1|A2|A|322
6OLZ|1|A2|A|323
6OLZ|1|A2|G|324

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L7a

Chain AL

60S ribosomal protein L13

Chain AN

60S ribosomal protein L15

Chain Ah

60S ribosomal protein L35

Chain Ai

60S ribosomal protein L36