J5_6OLZ_004
3D structure
- PDB id
- 6OLZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6OLZ|1|A2|G|3591, 6OLZ|1|A2|G|3596
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6OLZ_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1818
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OLZ|1|A2|G|2834
6OLZ|1|A2|C|2835
6OLZ|1|A2|A|2836
6OLZ|1|A2|A|2837
6OLZ|1|A2|G|2838
6OLZ|1|A2|C|2839
6OLZ|1|A2|C|2840
6OLZ|1|A2|G|2841
6OLZ|1|A2|G|2842
*
6OLZ|1|A2|U|2866
6OLZ|1|A2|G|2867
*
6OLZ|1|A2|U|3584
6OLZ|1|A2|G|3585
*
6OLZ|1|A2|C|3589
6OLZ|1|A2|G|3590
6OLZ|1|A2|G|3591
6OLZ|1|A2|A|3592
6OLZ|1|A2|C|3593
6OLZ|1|A2|C|3594
6OLZ|1|A2|A|3595
6OLZ|1|A2|G|3596
6OLZ|1|A2|G|3597
*
6OLZ|1|A2|C|3806
6OLZ|1|A2|A|3807
6OLZ|1|A2|C|3808
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AR
- 60S ribosomal protein L19
- Chain AV
- 60S ribosomal protein L23
- Chain AW
- 60S ribosomal protein L24
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
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