Loop J5_6OLZ

3D structure

PDB id: 6OLZ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: GUCGACUU*AUGCCGACGGGCG*CGUGCAUU*ACCUCGGGCCG*CGACC
Length: 45 nucleotides
Bulged bases: 6OLZ|1|B1|G|126, 6OLZ|1|B1|C|142, 6OLZ|1|B1|U|143, 6OLZ|1|B1|U|214, 6OLZ|1|B1|U|305, 6OLZ|1|B1|G|307
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6OLZ|1|B1|G|123
6OLZ|1|B1|U|124
6OLZ|1|B1|C|125
6OLZ|1|B1|G|126
6OLZ|1|B1|A|141
6OLZ|1|B1|C|142
6OLZ|1|B1|U|143
6OLZ|1|B1|U|144
*
6OLZ|1|B1|A|175
6OLZ|1|B1|U|176
6OLZ|1|B1|G|177
6OLZ|1|B1|C|178
6OLZ|1|B1|C|179
6OLZ|1|B1|G|180
6OLZ|1|B1|A|181
6OLZ|1|B1|C|182
6OLZ|1|B1|G|183
6OLZ|1|B1|G|184
6OLZ|1|B1|G|185
6OLZ|1|B1|C|186
6OLZ|1|B1|G|187
*
6OLZ|1|B1|C|212
6OLZ|1|B1|G|213
6OLZ|1|B1|U|214
6OLZ|1|B1|G|215
6OLZ|1|B1|C|216
6OLZ|1|B1|A|217
6OLZ|1|B1|U|218
6OLZ|1|B1|U|219
*
6OLZ|1|B1|A|302
6OLZ|1|B1|C|303
6OLZ|1|B1|C|304
6OLZ|1|B1|U|305
6OLZ|1|B1|C|306
6OLZ|1|B1|G|307
6OLZ|1|B1|G|308
6OLZ|1|B1|G|309
6OLZ|1|B1|C|310
6OLZ|1|B1|C|311
6OLZ|1|B1|G|312
*
6OLZ|1|B1|C|337
6OLZ|1|B1|G|338
6OLZ|1|B1|A|339
6OLZ|1|B1|C|340
6OLZ|1|B1|C|341

Current chains

Chain B1: 18S ribosomal RNA

Nearby chains

Chain AW: 60S ribosomal protein L24
Chain BE: 40S ribosomal protein S4, Y isoform 1
Chain BG: 40S ribosomal protein S6
Chain BI: 40S ribosomal protein S8

J5_6OLZ_015