J5_6OM6_001

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6OM6|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OM6_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0613

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6OM6|1|1|C|47
6OM6|1|1|G|48
6OM6|1|1|A|49
6OM6|1|1|U|50
6OM6|1|1|G|51
6OM6|1|1|A|52
6OM6|1|1|A|53
6OM6|1|1|G|54
*
6OM6|1|1|C|116
6OM6|1|1|G|117
6OM6|1|1|A|118
6OM6|1|1|A|119
6OM6|1|1|U|120
6OM6|1|1|G|121
*
6OM6|1|1|C|130
6OM6|1|1|A|131
*
6OM6|1|1|U|148
6OM6|1|1|A|149
6OM6|1|1|U|150
*
6OM6|1|1|A|176
6OM6|1|1|G|177
6OM6|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34