J5_6OM6_008

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OM6_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0699

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6OM6|1|2|C|36
6OM6|1|2|U|37
6OM6|1|2|G|38
6OM6|1|2|G|39
*
6OM6|1|2|C|403
6OM6|1|2|G|404
6OM6|1|2|U|405
6OM6|1|2|G|406
*
6OM6|1|2|C|436
6OM6|1|2|U|437
6OM6|1|2|U|438
6OM6|1|2|U|439
6OM6|1|2|C|440
6OM6|1|2|A|441
6OM6|1|2|G|442
*
6OM6|1|2|C|492
6OM6|1|2|A|493
6OM6|1|2|G|494
6OM6|1|2|A|495
6OM6|1|2|A|496
6OM6|1|2|G|497
6OM6|1|2|A|498
6OM6|1|2|A|499
6OM6|1|2|G|500
*
6OM6|1|2|C|545
6OM6|1|2|A|546
6OM6|1|2|A|547
6OM6|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12