J5_6OPE_014
3D structure
- PDB id
- 6OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 6OPE|1|YA|U|271|||C, 6OPE|1|YA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OPE|1|YA|C|268
6OPE|1|YA|U|269
6OPE|1|YA|A|270
6OPE|1|YA|A|270|||A
6OPE|1|YA|A|270|||B
6OPE|1|YA|C|270|||C
*
6OPE|1|YA|G|270|||W
6OPE|1|YA|G|270|||X
6OPE|1|YA|G|270|||Y
6OPE|1|YA|U|270|||Z
6OPE|1|YA|C|271|||A
6OPE|1|YA|G|271|||B
6OPE|1|YA|U|271|||C
6OPE|1|YA|G|271
*
6OPE|1|YA|C|366
6OPE|1|YA|G|370
6OPE|1|YA|A|371
6OPE|1|YA|G|372
6OPE|1|YA|U|373
6OPE|1|YA|A|374
6OPE|1|YA|C|375
*
6OPE|1|YA|G|399
6OPE|1|YA|G|400
6OPE|1|YA|A|401
6OPE|1|YA|A|402
6OPE|1|YA|U|403
6OPE|1|YA|C|404
6OPE|1|YA|U|405
6OPE|1|YA|G|406
*
6OPE|1|YA|U|421
6OPE|1|YA|A|422
6OPE|1|YA|A|423
6OPE|1|YA|G|424
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y1
- 50S ribosomal protein L28
- Chain YI
- 50S ribosomal protein L9
Coloring options: