J5_6OPE_018

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

6OPE|1|YA|G|1758, 6OPE|1|YA|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OPE_018 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.1004

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6OPE|1|YA|G|1674
6OPE|1|YA|C|1675
6OPE|1|YA|A|1676
6OPE|1|YA|A|1677
6OPE|1|YA|G|1678
6OPE|1|YA|U|1679
6OPE|1|YA|U|1680
6OPE|1|YA|G|1681
6OPE|1|YA|G|1682
*
6OPE|1|YA|U|1706
6OPE|1|YA|G|1707
*
6OPE|1|YA|C|1751
6OPE|1|YA|C|1752
*
6OPE|1|YA|G|1756
6OPE|1|YA|U|1757
6OPE|1|YA|G|1758
6OPE|1|YA|A|1759
6OPE|1|YA|A|1760
6OPE|1|YA|C|1761
6OPE|1|YA|A|1762
6OPE|1|YA|G|1763
6OPE|1|YA|G|1764
*
6OPE|1|YA|C|1988
6OPE|1|YA|G|1989
6OPE|1|YA|C|1990

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YE

50S ribosomal protein L3

Chain YO

50S ribosomal protein L14

Chain YT

50S ribosomal protein L19