3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GCAAGUUGG*UG*CC*GUGAACAGG*CGC
Length
25 nucleotides
Bulged bases
6OPE|1|YA|G|1758, 6OPE|1|YA|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6OPE_018 not in the Motif Atlas
Homologous match to J5_9DFE_005
Geometric discrepancy: 0.1004
The information below is about J5_9DFE_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6OPE|1|YA|G|1674
6OPE|1|YA|C|1675
6OPE|1|YA|A|1676
6OPE|1|YA|A|1677
6OPE|1|YA|G|1678
6OPE|1|YA|U|1679
6OPE|1|YA|U|1680
6OPE|1|YA|G|1681
6OPE|1|YA|G|1682
*
6OPE|1|YA|U|1706
6OPE|1|YA|G|1707
*
6OPE|1|YA|C|1751
6OPE|1|YA|C|1752
*
6OPE|1|YA|G|1756
6OPE|1|YA|U|1757
6OPE|1|YA|G|1758
6OPE|1|YA|A|1759
6OPE|1|YA|A|1760
6OPE|1|YA|C|1761
6OPE|1|YA|A|1762
6OPE|1|YA|G|1763
6OPE|1|YA|G|1764
*
6OPE|1|YA|C|1988
6OPE|1|YA|G|1989
6OPE|1|YA|C|1990

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain YE
50S ribosomal protein L3
Chain YO
50S ribosomal protein L14
Chain YT
50S ribosomal protein L19

Coloring options:


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