J5_6OPE_019

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

6OPE|1|YA|A|2062, 6OPE|1|YA|A|2448, 6OPE|1|YA|U|2449, 6OPE|1|YA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OPE|1|YA|A|2057
6OPE|1|YA|A|2058
6OPE|1|YA|A|2059
6OPE|1|YA|A|2060
6OPE|1|YA|G|2061
6OPE|1|YA|A|2062
6OPE|1|YA|C|2063
6OPE|1|YA|C|2064
*
6OPE|1|YA|G|2446
6OPE|1|YA|G|2447
6OPE|1|YA|A|2448
6OPE|1|YA|U|2449
6OPE|1|YA|A|2450
6OPE|1|YA|A|2451
6OPE|1|YA|C|2452
6OPE|1|YA|A|2453
*
6OPE|1|YA|U|2500
6OPE|1|YA|C|2501
6OPE|1|YA|G|2502
6OPE|1|YA|A|2503
6OPE|1|YA|U|2504
6OPE|1|YA|G|2505
6OPE|1|YA|U|2506
6OPE|1|YA|C|2507
*
6OPE|1|YA|G|2582
6OPE|1|YA|G|2583
6OPE|1|YA|U|2584
6OPE|1|YA|U|2585
6OPE|1|YA|C|2586
6OPE|1|YA|A|2587
6OPE|1|YA|G|2588
*
6OPE|1|YA|C|2606
6OPE|1|YA|G|2607
6OPE|1|YA|G|2608
6OPE|1|YA|U|2609
6OPE|1|YA|C|2610
6OPE|1|YA|U|2611

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain XY

Transfer RNA; tRNA

Chain Y0

50S ribosomal protein L27

Chain Y5

50S ribosomal protein L32

Chain YD

50S ribosomal protein L2

Chain YE

50S ribosomal protein L3

Chain YF

50S ribosomal protein L4

Chain YW

50S ribosomal protein L22