J5_6ORE_008

3D structure

PDB id

6ORE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release complex 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ORE_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0632

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6ORE|1|2|C|36
6ORE|1|2|U|37
6ORE|1|2|G|38
6ORE|1|2|G|39
*
6ORE|1|2|C|403
6ORE|1|2|G|404
6ORE|1|2|U|405
6ORE|1|2|G|406
*
6ORE|1|2|C|436
6ORE|1|2|U|437
6ORE|1|2|U|438
6ORE|1|2|U|439
6ORE|1|2|C|440
6ORE|1|2|A|441
6ORE|1|2|G|442
*
6ORE|1|2|C|492
6ORE|1|2|A|493
6ORE|1|2|G|494
6ORE|1|2|A|495
6ORE|1|2|A|496
6ORE|1|2|G|497
6ORE|1|2|A|498
6ORE|1|2|A|499
6ORE|1|2|G|500
*
6ORE|1|2|C|545
6ORE|1|2|A|546
6ORE|1|2|A|547
6ORE|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12