J5_6OSI_004

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

6OSI|1|RA|U|271|||D, 6OSI|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OSI|1|RA|C|268
6OSI|1|RA|U|269
6OSI|1|RA|A|270|||A
6OSI|1|RA|A|270|||B
6OSI|1|RA|A|270|||C
6OSI|1|RA|C|270|||D
*
6OSI|1|RA|G|270|||X
6OSI|1|RA|G|270|||Y
6OSI|1|RA|G|270|||Z
6OSI|1|RA|U|271|||A
6OSI|1|RA|C|271|||B
6OSI|1|RA|G|271|||C
6OSI|1|RA|U|271|||D
6OSI|1|RA|G|271|||E
*
6OSI|1|RA|C|366
6OSI|1|RA|G|370
6OSI|1|RA|A|371
6OSI|1|RA|G|372
6OSI|1|RA|U|373
6OSI|1|RA|A|374
6OSI|1|RA|C|375
*
6OSI|1|RA|G|399
6OSI|1|RA|G|400
6OSI|1|RA|A|401
6OSI|1|RA|A|402
6OSI|1|RA|U|403
6OSI|1|RA|C|404
6OSI|1|RA|U|405
6OSI|1|RA|G|406
*
6OSI|1|RA|U|421
6OSI|1|RA|A|422
6OSI|1|RA|A|423
6OSI|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9