J5_6OSI_021

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

6OSI|1|RA|A|2062, 6OSI|1|RA|A|2448, 6OSI|1|RA|U|2506, 6OSI|1|RA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OSI|1|RA|A|2057
6OSI|1|RA|A|2058
6OSI|1|RA|A|2059
6OSI|1|RA|A|2060
6OSI|1|RA|G|2061
6OSI|1|RA|A|2062
6OSI|1|RA|C|2063
6OSI|1|RA|C|2064
*
6OSI|1|RA|G|2446
6OSI|1|RA|G|2447
6OSI|1|RA|A|2448
6OSI|1|RA|U|2449
6OSI|1|RA|A|2450
6OSI|1|RA|A|2451
6OSI|1|RA|C|2452
6OSI|1|RA|A|2453
*
6OSI|1|RA|U|2500
6OSI|1|RA|C|2501
6OSI|1|RA|G|2502
6OSI|1|RA|A|2503
6OSI|1|RA|U|2504
6OSI|1|RA|G|2505
6OSI|1|RA|U|2506
6OSI|1|RA|C|2507
*
6OSI|1|RA|G|2582
6OSI|1|RA|G|2583
6OSI|1|RA|U|2584
6OSI|1|RA|U|2585
6OSI|1|RA|C|2586
6OSI|1|RA|A|2587
6OSI|1|RA|G|2588
*
6OSI|1|RA|C|2606
6OSI|1|RA|G|2607
6OSI|1|RA|G|2608
6OSI|1|RA|U|2609
6OSI|1|RA|C|2610
6OSI|1|RA|U|2611

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain R5

50S ribosomal protein L32

Chain RD

50S ribosomal protein L2

Chain RE

50S ribosomal protein L3

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15