J5_6OSK_012

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OSK_012 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0955

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6OSK|1|2|C|36
6OSK|1|2|U|37
6OSK|1|2|G|38
6OSK|1|2|G|39
*
6OSK|1|2|C|403
6OSK|1|2|G|404
6OSK|1|2|U|405
6OSK|1|2|G|406
*
6OSK|1|2|C|436
6OSK|1|2|U|437
6OSK|1|2|U|438
6OSK|1|2|U|439
6OSK|1|2|C|440
6OSK|1|2|A|441
6OSK|1|2|G|442
*
6OSK|1|2|C|492
6OSK|1|2|A|493
6OSK|1|2|G|494
6OSK|1|2|A|495
6OSK|1|2|A|496
6OSK|1|2|G|497
6OSK|1|2|A|498
6OSK|1|2|A|499
6OSK|1|2|G|500
*
6OSK|1|2|C|545
6OSK|1|2|A|546
6OSK|1|2|A|547
6OSK|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12