J5_6OSQ_009

3D structure

PDB id

6OSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated state bound Release complex 70S at long incubation time point

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OSQ_009 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.073

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6OSQ|1|2|C|36
6OSQ|1|2|U|37
6OSQ|1|2|G|38
6OSQ|1|2|G|39
*
6OSQ|1|2|C|403
6OSQ|1|2|G|404
6OSQ|1|2|U|405
6OSQ|1|2|G|406
*
6OSQ|1|2|C|436
6OSQ|1|2|U|437
6OSQ|1|2|U|438
6OSQ|1|2|U|439
6OSQ|1|2|C|440
6OSQ|1|2|A|441
6OSQ|1|2|G|442
*
6OSQ|1|2|C|492
6OSQ|1|2|A|493
6OSQ|1|2|G|494
6OSQ|1|2|A|495
6OSQ|1|2|A|496
6OSQ|1|2|G|497
6OSQ|1|2|A|498
6OSQ|1|2|A|499
6OSQ|1|2|G|500
*
6OSQ|1|2|C|545
6OSQ|1|2|A|546
6OSQ|1|2|A|547
6OSQ|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12