J5_6OT3_008

3D structure

PDB id

6OT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound Release complex 70S at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OT3_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.119

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6OT3|1|2|C|36
6OT3|1|2|U|37
6OT3|1|2|G|38
6OT3|1|2|G|39
*
6OT3|1|2|C|403
6OT3|1|2|G|404
6OT3|1|2|U|405
6OT3|1|2|G|406
*
6OT3|1|2|C|436
6OT3|1|2|U|437
6OT3|1|2|U|438
6OT3|1|2|U|439
6OT3|1|2|C|440
6OT3|1|2|A|441
6OT3|1|2|G|442
*
6OT3|1|2|C|492
6OT3|1|2|A|493
6OT3|1|2|G|494
6OT3|1|2|A|495
6OT3|1|2|A|496
6OT3|1|2|G|497
6OT3|1|2|A|498
6OT3|1|2|A|499
6OT3|1|2|G|500
*
6OT3|1|2|C|545
6OT3|1|2|A|546
6OT3|1|2|A|547
6OT3|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4