J5_6OUO_001

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6OUO|1|1|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OUO_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0989

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6OUO|1|1|C|47
6OUO|1|1|G|48
6OUO|1|1|A|49
6OUO|1|1|U|50
6OUO|1|1|G|51
6OUO|1|1|A|52
6OUO|1|1|A|53
6OUO|1|1|G|54
*
6OUO|1|1|C|116
6OUO|1|1|G|117
6OUO|1|1|A|118
6OUO|1|1|A|119
6OUO|1|1|U|120
6OUO|1|1|G|121
*
6OUO|1|1|C|130
6OUO|1|1|A|131
*
6OUO|1|1|U|148
6OUO|1|1|A|149
6OUO|1|1|U|150
*
6OUO|1|1|A|176
6OUO|1|1|G|177
6OUO|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34