J5_6OUO_008

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6OUO_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.119

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6OUO|1|2|C|36
6OUO|1|2|U|37
6OUO|1|2|G|38
6OUO|1|2|G|39
*
6OUO|1|2|C|403
6OUO|1|2|G|404
6OUO|1|2|U|405
6OUO|1|2|G|406
*
6OUO|1|2|C|436
6OUO|1|2|U|437
6OUO|1|2|U|438
6OUO|1|2|U|439
6OUO|1|2|C|440
6OUO|1|2|A|441
6OUO|1|2|G|442
*
6OUO|1|2|C|492
6OUO|1|2|A|493
6OUO|1|2|G|494
6OUO|1|2|A|495
6OUO|1|2|A|496
6OUO|1|2|G|497
6OUO|1|2|A|498
6OUO|1|2|A|499
6OUO|1|2|G|500
*
6OUO|1|2|C|545
6OUO|1|2|A|546
6OUO|1|2|A|547
6OUO|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4