J5_6OXA_007

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

6OXA|1|RA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OXA|1|RA|C|601
6OXA|1|RA|G|602
6OXA|1|RA|A|603
6OXA|1|RA|G|604
*
6OXA|1|RA|C|624
6OXA|1|RA|G|625
6OXA|1|RA|U|626
6OXA|1|RA|A|627
6OXA|1|RA|G|628
*
6OXA|1|RA|C|635
6OXA|1|RA|G|636
6OXA|1|RA|A|637
6OXA|1|RA|G|638
*
6OXA|1|RA|C|650
6OXA|1|RA|G|651
6OXA|1|RA|C|652
6OXA|1|RA|A|653
6OXA|1|RA|A|654
6OXA|1|RA|G|654|||A
*
6OXA|1|RA|C|654|||T
6OXA|1|RA|A|654|||U
6OXA|1|RA|A|654|||V
6OXA|1|RA|A|655
6OXA|1|RA|G|656

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R8

50S ribosomal protein L35

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15