J5_6OXI_009
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 6OXI|1|RA|A|2062, 6OXI|1|RA|A|2448, 6OXI|1|RA|U|2449, 6OXI|1|RA|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OXI|1|RA|A|2057
6OXI|1|RA|A|2058
6OXI|1|RA|A|2059
6OXI|1|RA|A|2060
6OXI|1|RA|G|2061
6OXI|1|RA|A|2062
6OXI|1|RA|C|2063
6OXI|1|RA|C|2064
*
6OXI|1|RA|G|2446
6OXI|1|RA|G|2447
6OXI|1|RA|A|2448
6OXI|1|RA|U|2449
6OXI|1|RA|A|2450
6OXI|1|RA|A|2451
6OXI|1|RA|C|2452
6OXI|1|RA|A|2453
*
6OXI|1|RA|U|2500
6OXI|1|RA|C|2501
6OXI|1|RA|G|2502
6OXI|1|RA|A|2503
6OXI|1|RA|U|2504
6OXI|1|RA|G|2505
6OXI|1|RA|U|2506
6OXI|1|RA|C|2507
*
6OXI|1|RA|G|2582
6OXI|1|RA|G|2583
6OXI|1|RA|U|2584
6OXI|1|RA|U|2585
6OXI|1|RA|C|2586
6OXI|1|RA|A|2587
6OXI|1|RA|G|2588
*
6OXI|1|RA|C|2606
6OXI|1|RA|G|2607
6OXI|1|RA|G|2608
6OXI|1|RA|U|2609
6OXI|1|RA|C|2610
6OXI|1|RA|U|2611
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QV
- Transfer RNA; tRNA
- Chain R0
- 50S ribosomal protein L27
- Chain R5
- 50S ribosomal protein L32
- Chain RD
- 50S ribosomal protein L2
- Chain RE
- 50S ribosomal protein L3
- Chain RF
- 50S ribosomal protein L4
- Chain RP
- 50S ribosomal protein L15
- Chain RQ
- 50S ribosomal protein L16
- Chain RW
- 50S ribosomal protein L22
- Chain ZA
- CCPuro
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