J5_6P4G_004

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

6P4G|1|2|G|126, 6P4G|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P4G|1|2|G|123
6P4G|1|2|U|124
6P4G|1|2|C|125
6P4G|1|2|G|126
6P4G|1|2|C|127
6P4G|1|2|U|128
6P4G|1|2|C|129
6P4G|1|2|G|130
*
6P4G|1|2|C|182
6P4G|1|2|G|183
6P4G|1|2|G|184
6P4G|1|2|G|185
*
6P4G|1|2|U|214
6P4G|1|2|G|215
*
6P4G|1|2|C|310
6P4G|1|2|C|311
6P4G|1|2|G|312
*
6P4G|1|2|C|337
6P4G|1|2|G|338
6P4G|1|2|A|339
6P4G|1|2|C|340
6P4G|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain H

eS6

Chain J

eS8