J5_6P5I_004

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

6P5I|1|2|G|126, 6P5I|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5I|1|2|G|123
6P5I|1|2|U|124
6P5I|1|2|C|125
6P5I|1|2|G|126
6P5I|1|2|C|127
6P5I|1|2|U|128
6P5I|1|2|C|129
6P5I|1|2|G|130
*
6P5I|1|2|C|182
6P5I|1|2|G|183
6P5I|1|2|G|184
6P5I|1|2|G|185
*
6P5I|1|2|U|214
6P5I|1|2|G|215
*
6P5I|1|2|C|310
6P5I|1|2|C|311
6P5I|1|2|G|312
*
6P5I|1|2|C|337
6P5I|1|2|G|338
6P5I|1|2|A|339
6P5I|1|2|C|340
6P5I|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain H

eS6

Chain J

eS8