J5_6P5N_002

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|2|C|30
6P5N|1|2|U|31
6P5N|1|2|U|32
6P5N|1|2|G|33
6P5N|1|2|U|34
*
6P5N|1|2|A|521
6P5N|1|2|A|522
6P5N|1|2|A|523
6P5N|1|2|U|524
6P5N|1|2|A|525
6P5N|1|2|A|526
6P5N|1|2|C|527
*
6P5N|1|2|G|558
6P5N|1|2|G|559
6P5N|1|2|A|560
6P5N|1|2|A|561
6P5N|1|2|U|562
6P5N|1|2|G|563
6P5N|1|2|A|564
6P5N|1|2|G|565
*
6P5N|1|2|C|585
6P5N|1|2|G|586
6P5N|1|2|A|587
6P5N|1|2|G|588
6P5N|1|2|G|589
6P5N|1|2|A|590
6P5N|1|2|U|591
6P5N|1|2|C|592
6P5N|1|2|C|593
6P5N|1|2|A|594
6P5N|1|2|U|595
*
6P5N|1|2|A|641
6P5N|1|2|U|642
6P5N|1|2|A|643
6P5N|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain f

eS30