J5_6PCH_001

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6PCH|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCH_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0775

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6PCH|1|I|C|47
6PCH|1|I|G|48
6PCH|1|I|A|49
6PCH|1|I|U|50
6PCH|1|I|G|51
6PCH|1|I|A|52
6PCH|1|I|A|53
6PCH|1|I|G|54
*
6PCH|1|I|C|116
6PCH|1|I|G|117
6PCH|1|I|A|118
6PCH|1|I|A|119
6PCH|1|I|U|120
6PCH|1|I|G|121
*
6PCH|1|I|C|130
6PCH|1|I|A|131
*
6PCH|1|I|U|148
6PCH|1|I|A|149
6PCH|1|I|U|150
*
6PCH|1|I|A|176
6PCH|1|I|G|177
6PCH|1|I|G|178

Current chains

Chain I

23S ribosomal RNA

Nearby chains