J5_6PCQ_001

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6PCQ|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCQ_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0609

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6PCQ|1|I|C|47
6PCQ|1|I|G|48
6PCQ|1|I|A|49
6PCQ|1|I|U|50
6PCQ|1|I|G|51
6PCQ|1|I|A|52
6PCQ|1|I|A|53
6PCQ|1|I|G|54
*
6PCQ|1|I|C|116
6PCQ|1|I|G|117
6PCQ|1|I|A|118
6PCQ|1|I|A|119
6PCQ|1|I|U|120
6PCQ|1|I|G|121
*
6PCQ|1|I|C|130
6PCQ|1|I|A|131
*
6PCQ|1|I|U|148
6PCQ|1|I|A|149
6PCQ|1|I|U|150
*
6PCQ|1|I|A|176
6PCQ|1|I|G|177
6PCQ|1|I|G|178

Current chains

Chain I

23S ribosomal RNA

Nearby chains