J5_6PCQ_003

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGACUU*AGAC*GUUCU*AGC*GCGAAUG

Length

25 nucleotides

Bulged bases

6PCQ|1|I|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCQ|1|I|C|584
6PCQ|1|I|G|585
6PCQ|1|I|A|586
6PCQ|1|I|C|587
6PCQ|1|I|U|588
6PCQ|1|I|U|589
*
6PCQ|1|I|A|668
6PCQ|1|I|G|669
6PCQ|1|I|A|670
6PCQ|1|I|C|671
*
6PCQ|1|I|G|809
6PCQ|1|I|U|810
6PCQ|1|I|U|811
6PCQ|1|I|C|812
6PCQ|1|I|U|813
*
6PCQ|1|I|A|1194
6PCQ|1|I|G|1195
6PCQ|1|I|C|1196
*
6PCQ|1|I|G|1250
6PCQ|1|I|C|1251
6PCQ|1|I|G|1252
6PCQ|1|I|A|1253
6PCQ|1|I|A|1254
6PCQ|1|I|U|1255
6PCQ|1|I|G|1256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4