J5_6PCQ_005
3D structure
- PDB id
- 6PCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to VM2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 6PCQ|1|I|A|2062, 6PCQ|1|I|A|2448, 6PCQ|1|I|U|2449, 6PCQ|1|I|U|2609
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6PCQ|1|I|G|2057
6PCQ|1|I|A|2058
6PCQ|1|I|A|2059
6PCQ|1|I|A|2060
6PCQ|1|I|G|2061
6PCQ|1|I|A|2062
6PCQ|1|I|C|2063
6PCQ|1|I|C|2064
*
6PCQ|1|I|G|2446
6PCQ|1|I|G|2447
6PCQ|1|I|A|2448
6PCQ|1|I|U|2449
6PCQ|1|I|A|2450
6PCQ|1|I|A|2451
6PCQ|1|I|C|2452
6PCQ|1|I|A|2453
*
6PCQ|1|I|U|2500
6PCQ|1|I|C|2501
6PCQ|1|I|G|2502
6PCQ|1|I|2MA|2503
6PCQ|1|I|PSU|2504
6PCQ|1|I|G|2505
6PCQ|1|I|U|2506
*
6PCQ|1|I|G|2583
6PCQ|1|I|U|2584
6PCQ|1|I|U|2585
6PCQ|1|I|U|2586
6PCQ|1|I|A|2587
6PCQ|1|I|G|2588
*
6PCQ|1|I|C|2606
6PCQ|1|I|G|2607
6PCQ|1|I|G|2608
6PCQ|1|I|U|2609
6PCQ|1|I|C|2610
6PCQ|1|I|C|2611
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L3
Coloring options: