J5_6PCS_001

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6PCS|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6PCS_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0763

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6PCS|1|I|C|47
6PCS|1|I|G|48
6PCS|1|I|A|49
6PCS|1|I|U|50
6PCS|1|I|G|51
6PCS|1|I|A|52
6PCS|1|I|A|53
6PCS|1|I|G|54
*
6PCS|1|I|C|116
6PCS|1|I|G|117
6PCS|1|I|A|118
6PCS|1|I|A|119
6PCS|1|I|U|120
6PCS|1|I|G|121
*
6PCS|1|I|C|130
6PCS|1|I|A|131
*
6PCS|1|I|U|148
6PCS|1|I|A|149
6PCS|1|I|U|150
*
6PCS|1|I|A|176
6PCS|1|I|G|177
6PCS|1|I|G|178

Current chains

Chain I

23S ribosomal RNA

Nearby chains